If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ), 'gf_id' => 'HOM05D000641', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000641' ), 'data_identifier' => 'HOM05D000641', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000641', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '889', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07530' => 'bna', 'A01p16460' => 'bna', 'A01p35110' => 'bna', 'A03p24720' => 'bna', 'A03p55810' => 'bna', 'A04p18390' => 'bna', 'A05p04280' => 'bna', 'A06p03500' => 'bna', 'A06p48000' => 'bna', 'A08p03490' => 'bna', 'A09p56620' => 'bna', 'Aa31LG10G4200' => 'aar', 'Aa31LG1G25850' => 'aar', 'Aa31LG2G19650' => 'aar', 'Aa31LG7G10390' => 'aar', 'Aa31LG7G12690' => 'aar', 'Aa31LG8G6320' => 'aar', 'Aa31LG9G13250' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1347' => 'aag', 'Actinidia00383' => 'ach', 'Actinidia02270' => 'ach', 'Actinidia04379' => 'ach', 'Actinidia08252' => 'ach', 'Actinidia22684' => 'ach', 'Actinidia24373' => 'ach', 'Actinidia24993' => 'ach', 'Actinidia27985' => 'ach', 'Actinidia30485' => 'ach', 'Actinidia38099' => 'ach', 'Actinidia38310' => 'ach', 'Actinidia39298' => 'ach', 'Ah.01g009420' => 'amhyb', 'Ah.05g167230' => 'amhyb', 'Ah.07g207340' => 'amhyb', 'Ah.09g231970' => 'amhyb', 'Ah.14g084540' => 'amhyb', 'Ah.14g085540' => 'amhyb', 'AL1G57430' => 'aly', 'AL3G33000' => 'aly', 'AL3G53930' => 'aly', 'AL4G14120' => 'aly', 'AL4G43140' => 'aly', 'AL5G42180' => 'aly', 'AL7G21410' => 'aly', 'AL7G27960' => 'aly', 'AL8G17490' => 'aly', 'Aqoxy1G02752' => 'aox', 'Aqoxy3G02597' => 'aox', 'Aqoxy5G00894' => 'aox', 'Aqoxy6G02703' => 'aox', 'Aqoxy7G03360' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20MRK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4122HZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.45LA2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.65ZZLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92XMB3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATG8WK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVJ6NA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G1PT5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IDSU74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFG75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J86N0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M4RUY8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R3A1DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RA1C4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S24B42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCYQ78' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2FQN4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAG6ZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBT28R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6IUV8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WU66F1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YH4NKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFYB8G' => 'arhy', 'AT1G49890' => 'ath', 'AT2G20616' => 'ath', 'AT2G20815' => 'ath', 'AT2G24070' => 'ath', 'AT2G44190' => 'ath', 'AT3G19570' => 'ath', 'AT3G60000' => 'ath', 'AT4G25190' => 'ath', 'AT4G30710' => 'ath', 'AT4G30740' => 'ath', 'AT5G43155' => 'ath', 'AT5G43160' => 'ath', 'ATR0019G047' => 'atr', 'ATR0019G059' => 'atr', 'ATR0317G059' => 'atr', 'ATR0693G056' => 'atr', 'ATR0751G229' => 'atr', 'Atru.chr1.2252' => 'acertr', 'Atru.chr1.747' => 'acertr', 'Atru.chr13.814' => 'acertr', 'Atru.chr5.2382' => 'acertr', 'Atru.chr6.3062' => 'acertr', 'AUR62015434' => 'cqu', 'AUR62016006' => 'cqu', 'AUR62021213' => 'cqu', 'AUR62022490' => 'cqu', 'AUR62025351' => 'cqu', 'AUR62028354' => 'cqu', 'AUR62031341' => 'cqu', 'AUR62037447' => 'cqu', 'AUR62038786' => 'cqu', 'BcaB01g03325' => 'bca', 'BcaB04g17287' => 'bca', 'BcaB04g20694' => 'bca', 'BcaB06g29364' => 'bca', 'BcaB07g33440' => 'bca', 'BcaC01g04608' => 'bca', 'BcaC01g05182' => 'bca', 'BcaC02g08500' => 'bca', 'BcaC02g12331' => 'bca', 'BcaC06g31718' => 'bca', 'BcaC06g32833' => 'bca', 'BcaC06g34673' => 'bca', 'BcaC06g34674' => 'bca', 'BcaC06g34675' => 'bca', 'BcaC06g36770' => 'bca', 'BcaC07g40963' => 'bca', 'BcaC09g48922' => 'bca', 'BcaC09g51865' => 'bca', 'BcaNung02745' => 'bca', 'BcaNung04826' => 'bca', 'BcaNung06933' => 'bca', 'BolC1t01992H' => 'bol', 'BolC1t03945H' => 'bol', 'BolC1t04420H' => 'bol', 'BolC2t10427H' => 'bol', 'BolC3t15294H' => 'bol', 'BolC3t21250H' => 'bol', 'BolC4t22139H' => 'bol', 'BolC4t23250H' => 'bol', 'BolC4t26922H' => 'bol', 'BolC4t28593H' => 'bol', 'BolC6t35596H' => 'bol', 'BolC7t40463H' => 'bol', 'BolC7t43093H' => 'bol', 'BolC7t45895H' => 'bol', 'BolC7t46277H' => 'bol', 'BolC8t51530H' => 'bol', 'BraA01t03593Z' => 'bra', 'BraA03t11678Z' => 'bra', 'BraA03t14649Z' => 'bra', 'BraA03t15069Z' => 'bra', 'BraA04t17450Z' => 'bra', 'BraA04t18783Z' => 'bra', 'BraA05t19413Z' => 'bra', 'BraA06t23558Z' => 'bra', 'BraA06t27670Z' => 'bra', 'BraA07t27788Z' => 'bra', 'BraA08t32383Z' => 'bra', 'BraA09t41053Z' => 'bra', 'C01p20610' => 'bna', 'C01p44540' => 'bna', 'C03p29460' => 'bna', 'C03p35750' => 'bna', 'C03p89360' => 'bna', 'C04p05060' => 'bna', 'C04p53660' => 'bna', 'C04p70930' => 'bna', 'C05p34190' => 'bna', 'C06p04660' => 'bna', 'C07p00120' => 'bna', 'C07p25730' => 'bna', 'C07p54090' => 'bna', 'C07p58180' => 'bna', 'C08p39570' => 'bna', 'CAN.G134.47' => 'can', 'CAN.G160.24' => 'can', 'CAN.G248.59' => 'can', 'CAN.G606.48' => 'can', 'CAN.G724.7' => 'can', 'CAN.G784.7' => 'can', 'CAN.G937.2' => 'can', 'CANSAT11G2459' => 'cansat', 'CANSAT25G2911' => 'cansat', 'CANSAT25G2917' => 'cansat', 'CANSAT25G2971' => 'cansat', 'CANSAT56G1736' => 'cansat', 'CANSAT56G4329' => 'cansat', 'CANSAT64G1209' => 'cansat', 'CARHR039950' => 'chi', 'CARHR046100' => 'chi', 'CARHR095020' => 'chi', 'CARHR111500' => 'chi', 'CARHR118280' => 'chi', 'CARHR139350' => 'chi', 'CARHR170320' => 'chi', 'CARHR180750' => 'chi', 'CARHR232590' => 'chi', 'CARHR238590' => 'chi', 'Carub.0001s3910' => 'cru', 'Carub.0003s1941' => 'cru', 'Carub.0003s3539' => 'cru', 'Carub.0004s0324' => 'cru', 'Carub.0004s2676' => 'cru', 'Carub.0005s2673' => 'cru', 'Carub.0007s0977' => 'cru', 'Carub.0007s1584' => 'cru', 'Carub.0008s0553' => 'cru', 'Ca_00787_v3' => 'car', 'Ca_01534_v3' => 'car', 'Ca_11042_v3' => 'car', 'Ca_11372_v3' => 'car', 'Ca_13234_v3' => 'car', 'Ca_14101_v3' => 'car', 'Ca_21148_v3' => 'car', 'CBR_g8632' => 'cbr', 'Cc02_g04410' => 'ccan', 'Cc02_g19710' => 'ccan', 'Cc05_g06430' => 'ccan', 'Cc06_g14640' => 'ccan', 'Cc09_g00010' => 'ccan', 'Cc10_g05630' => 'ccan', 'CDE04G0032' => 'cde', 'CDE04G1052' => 'cde', 'CDE05G0652' => 'cde', 'CDE06G0961' => 'cde', 'CDE07G1263' => 'cde', 'Cfa004641' => 'cfa', 'Cfa008148' => 'cfa', 'Cfa013676' => 'cfa', 'Cfa014550' => 'cfa', 'Cfa020800' => 'cfa', 'Ciclev10000532m.g' => 'ccl', 'Ciclev10006535m.g' => 'ccl', 'Ciclev10007765m.g' => 'ccl', 'Ciclev10014837m.g' => 'ccl', 'Ciclev10017570m.g' => 'ccl', 'Ciclev10028034m.g' => 'ccl', 'CiPaw.04G013400' => 'cil', 'CiPaw.04G123000' => 'cil', 'CiPaw.05G016300' => 'cil', 'CiPaw.06G166700' => 'cil', 'CiPaw.07G176500' => 'cil', 'CiPaw.10G085300' => 'cil', 'CiPaw.15G165600' => 'cil', 'CiPaw.16G107500' => 'cil', 'ClCG02G006740' => 'cla', 'ClCG02G014370' => 'cla', 'ClCG02G017370' => 'cla', 'ClCG05G020500' => 'cla', 'ClCG06G012570' => 'cla', 'ClCG08G016390' => 'cla', 'ClCG09G013070' => 'cla', 'COL.COLO4_14100' => 'col', 'COL.COLO4_23955' => 'col', 'COL.COLO4_28521' => 'col', 'COL.COLO4_32535' => 'col', 'Cpa.g.sc106.71' => 'cpa', 'Cpa.g.sc13.292' => 'cpa', 'Cpa.g.sc21.101' => 'cpa', 'Cpa.g.sc27.175' => 'cpa', 'Cpa.g.sc27.177' => 'cpa', 'Cpa.g.sc27.181' => 'cpa', 'Cpa.g.sc34.106' => 'cpa', 'Cpa.g.sc46.181' => 'cpa', 'Cre02.g101750' => 'cre', 'CsaV3_1G029130' => 'csa', 'CsaV3_2G007630' => 'csa', 'CsaV3_2G026220' => 'csa', 'CsaV3_3G050080' => 'csa', 'CsaV3_4G034920' => 'csa', 'CsaV3_6G012470' => 'csa', 'CsaV3_7G007900' => 'csa', 'CSS0009467' => 'camsi', 'CSS0009885' => 'camsi', 'CSS0010832' => 'camsi', 'CSS0010974' => 'camsi', 'CSS0020203' => 'camsi', 'CSS0022500' => 'camsi', 'CSS0026813' => 'camsi', 'CSS0034498' => 'camsi', 'CSS0037478' => 'camsi', 'CSS0040494' => 'camsi', 'CSS0045716' => 'camsi', 'DCAR_001683' => 'dca', 'DCAR_012812' => 'dca', 'DCAR_012985' => 'dca', 'DCAR_017917' => 'dca', 'DCAR_018115' => 'dca', 'DCAR_019412' => 'dca', 'DCAR_022840' => 'dca', 'DCAR_029116' => 'dca', 'Dinv04374' => 'din', 'Dinv06573' => 'din', 'Dinv15796' => 'din', 'Dinv23702' => 'din', 'Dinv39248' => 'din', 'Dinv41356' => 'din', 'Dinv42224' => 'din', 'Dinv42830' => 'din', 'Dinv42831' => 'din', 'Dinv43269' => 'din', 'Dinv43270' => 'din', 'Dinv44969' => 'din', 'Duzib041G0512' => 'dzi', 'Duzib052G0495' => 'dzi', 'Duzib068G1481' => 'dzi', 'Duzib093G1400' => 'dzi', 'Duzib116G0728' => 'dzi', 'Duzib150G0605' => 'dzi', 'Duzib168G1759' => 'dzi', 'Duzib187G0132' => 'dzi', 'Duzib248G0267' => 'dzi', 'Duzib248G0813' => 'dzi', 'ECA232G0602' => 'eca', 'ECA232G0888' => 'eca', 'ECA234G1172' => 'eca', 'ECA234G1980' => 'eca', 'ECA234G3276' => 'eca', 'ECA236G1541' => 'eca', 'ECA236G2399' => 'eca', 'ECA240G0909' => 'eca', 'ECA240G1180' => 'eca', 'ECA246G5194' => 'eca', 'EL10Ac3g05668' => 'bvu', 'EL10Ac3g05858' => 'bvu', 'EL10Ac8g18925' => 'bvu', 'EL10Ac8g19367' => 'bvu', 'Eucgr.A00872' => 'egr', 'Eucgr.A01785' => 'egr', 'Eucgr.C02506' => 'egr', 'Eucgr.D00975' => 'egr', 'Eucgr.F02263' => 'egr', 'Eucgr.G01262' => 'egr', 'Eucgr.I01075' => 'egr', 'Eucgr.K00166' => 'egr', 'Eucgr.K00991' => 'egr', 'FAN01G2651' => 'fan', 'FAN02G0524' => 'fan', 'FAN03G1792' => 'fan', 'FAN05G1593' => 'fan', 'FAN06G1376' => 'fan', 'FAN06G5028' => 'fan', 'FAN10G0113' => 'fan', 'FAN14G1122' => 'fan', 'FAN15G3605' => 'fan', 'FAN15G3708' => 'fan', 'FAN20G0074' => 'fan', 'FAN20G1023' => 'fan', 'FAN21G1917' => 'fan', 'FAN23G1679' => 'fan', 'FAN23G2400' => 'fan', 'FAN24G0570' => 'fan', 'FAN24G3455' => 'fan', 'FAN25G1388' => 'fan', 'FAN26G3212' => 'fan', 'FAN27G0288' => 'fan', 'FAN27G3164' => 'fan', 'FAN28G1534' => 'fan', 'FvH4_1g00660' => 'fve', 'FvH4_2g04080' => 'fve', 'FvH4_2g33270' => 'fve', 'FvH4_3g00020' => 'fve', 'FvH4_7g27280' => 'fve', 'Glyma.02G206000' => 'gma', 'Glyma.04G120400' => 'gma', 'Glyma.04G155000' => 'gma', 'Glyma.06G045300' => 'gma', 'Glyma.06G225100' => 'gma', 'Glyma.06G298000' => 'gma', 'Glyma.06G318000' => 'gma', 'Glyma.09G018100' => 'gma', 'Glyma.10G258400' => 'gma', 'Glyma.12G107200' => 'gma', 'Glyma.12G107401' => 'gma', 'Glyma.13G300600' => 'gma', 'Glyma.14G087900' => 'gma', 'Glyma.15G124000' => 'gma', 'Glyma.17G072000' => 'gma', 'Glyma.17G236400' => 'gma', 'Glyma.20G132700' => 'gma', 'Gohir.A02G081400' => 'ghi', 'Gohir.A03G183700' => 'ghi', 'Gohir.A04G059800' => 'ghi', 'Gohir.A05G208600' => 'ghi', 'Gohir.A06G023300' => 'ghi', 'Gohir.A07G042000' => 'ghi', 'Gohir.A08G236200' => 'ghi', 'Gohir.A12G136800' => 'ghi', 'Gohir.A12G266850' => 'ghi', 'Gohir.A13G045900' => 'ghi', 'Gohir.A13G046000' => 'ghi', 'Gohir.D02G089066' => 'ghi', 'Gohir.D02G203000' => 'ghi', 'Gohir.D04G096516' => 'ghi', 'Gohir.D05G212000' => 'ghi', 'Gohir.D06G020500' => 'ghi', 'Gohir.D07G046200' => 'ghi', 'Gohir.D08G256800' => 'ghi', 'Gohir.D12G267300' => 'ghi', 'Gohir.D13G045000' => 'ghi', 'Gohir.D13G045100' => 'ghi', 'Gorai.001G049400' => 'gra', 'Gorai.004G273800' => 'gra', 'Gorai.005G099700' => 'gra', 'Gorai.005G232600' => 'gra', 'Gorai.006G066500' => 'gra', 'Gorai.008G152100' => 'gra', 'Gorai.008G287300' => 'gra', 'Gorai.009G218600' => 'gra', 'Gorai.010G025000' => 'gra', 'Gorai.013G049800' => 'gra', 'Gorai.013G049900' => 'gra', 'GSVIVG01009361001' => 'vvi', 'GSVIVG01023645001' => 'vvi', 'GSVIVG01030582001' => 'vvi', 'GSVIVG01037854001' => 'vvi', 'HanXRQChr01g0000621' => 'han', 'HanXRQChr01g0027961' => 'han', 'HanXRQChr03g0065521' => 'han', 'HanXRQChr03g0069951' => 'han', 'HanXRQChr04g0128581' => 'han', 'HanXRQChr05g0138281' => 'han', 'HanXRQChr09g0246781' => 'han', 'HanXRQChr09g0266591' => 'han', 'HanXRQChr10g0297061' => 'han', 'HanXRQChr10g0313701' => 'han', 'HanXRQChr13g0391041' => 'han', 'HanXRQChr16g0509061' => 'han', 'HanXRQChr16g0512821' => 'han', 'HanXRQChr16g0515301' => 'han', 'HanXRQChr17g0542491' => 'han', 'Haze_07064' => 'cav', 'Haze_10239' => 'cav', 'Haze_10240' => 'cav', 'Haze_13095' => 'cav', 'Haze_13894' => 'cav', 'Haze_19157' => 'cav', 'Haze_19388' => 'cav', 'Haze_22313' => 'cav', 'Haze_22317' => 'cav', 'Hma1.2p1_0222F.1_g093800' => 'hma', 'Hma1.2p1_1023F.1_g248870' => 'hma', 'Hma1.2p1_1174F.1_g263800' => 'hma', 'Hma1.2p1_1773F.1_g301690' => 'hma', 'Hma1.2p1_2085F.1_g313690' => 'hma', 'Hma1.2p1_2085F.1_g313700' => 'hma', 'HPP92_007755' => 'vpl', 'HPP92_007757' => 'vpl', 'HPP92_007862' => 'vpl', 'HPP92_012353' => 'vpl', 'HPP92_017176' => 'vpl', 'HPP92_017629' => 'vpl', 'HPP92_018754' => 'vpl', 'HPP92_019619' => 'vpl', 'HPP92_019620' => 'vpl', 'HPP92_019621' => 'vpl', 'HPP92_020488' => 'vpl', 'HPP92_020491' => 'vpl', 'HPP92_021038' => 'vpl', 'HPP92_021943' => 'vpl', 'HPP92_021969' => 'vpl', 'HPP92_023669' => 'vpl', 'HPP92_023686' => 'vpl', 'HPP92_027427' => 'vpl', 'Hund04725' => 'sun', 'Hund05314' => 'sun', 'Hund08938' => 'sun', 'Hund12604' => 'sun', 'Lalb_Chr02g0145071' => 'lal', 'Lalb_Chr06g0165231' => 'lal', 'Lalb_Chr07g0179951' => 'lal', 'Lalb_Chr08g0234241' => 'lal', 'Lalb_Chr13g0300731' => 'lal', 'Lalb_Chr14g0366661' => 'lal', 'Lalb_Chr14g0368291' => 'lal', 'Lalb_Chr15g0088501' => 'lal', 'Lalb_Chr18g0048911' => 'lal', 'Lalb_Chr20g0119771' => 'lal', 'Lalb_Chr21g0308131' => 'lal', 'Lj1P1250T23' => 'lonja', 'Lj2A592G35' => 'lonja', 'Lj2g0015341' => 'lja', 'Lj3g0000685' => 'lja', 'Lj3g0004709' => 'lja', 'Lj3g0012958' => 'lja', 'Lj4C69T11' => 'lonja', 'Lj4C69T12' => 'lonja', 'Lj4C760T1' => 'lonja', 'Lj4g0016087' => 'lja', 'Lj5A217T97' => 'lonja', 'Lj5g0009394' => 'lja', 'Lj5g0014577' => 'lja', 'Lj6g0002398' => 'lja', 'Lj6g0021862' => 'lja', 'Lj7A462T54' => 'lonja', 'Lj8A43T54' => 'lonja', 'Lj9A326T75' => 'lonja', 'Lsat_1_v5_gn_4_130781' => 'lsa', 'Lsat_1_v5_gn_4_65181' => 'lsa', 'Lsat_1_v5_gn_4_70320' => 'lsa', 'Lsat_1_v5_gn_5_89401' => 'lsa', 'Lsat_1_v5_gn_6_112381' => 'lsa', 'Lsat_1_v5_gn_7_85601' => 'lsa', 'Lsat_1_v5_gn_8_63840' => 'lsa', 'Lsat_1_v5_gn_9_112361' => 'lsa', 'Lsat_1_v5_gn_9_51881' => 'lsa', 'Manes.05G121400' => 'mes', 'Manes.05G180700' => 'mes', 'Manes.06G031100' => 'mes', 'Manes.06G133400' => 'mes', 'Manes.07G062300' => 'mes', 'Manes.07G062316' => 'mes', 'Manes.07G062332' => 'mes', 'Manes.07G062396' => 'mes', 'Manes.07G063050' => 'mes', 'Manes.10G068200' => 'mes', 'Manes.10G080600' => 'mes', 'Manes.14G143616' => 'mes', 'Manes.18G045100' => 'mes', 'Mapoly0014s0117' => 'mpo', 'MBI02_g35905_MAGBIO' => 'mbi', 'MBI05_g33210_MAGBIO' => 'mbi', 'MBI05_g33211_MAGBIO' => 'mbi', 'MBI05_g42458_MAGBIO' => 'mbi', 'MBI14_g11780_MAGBIO' => 'mbi', 'MBI15_g27188_MAGBIO' => 'mbi', 'MBI16_g02951_MAGBIO' => 'mbi', 'MD00G1208400' => 'mdo', 'MD00G1208500' => 'mdo', 'MD01G1181900' => 'mdo', 'MD02G1005400' => 'mdo', 'MD05G1097600' => 'mdo', 'MD05G1097800' => 'mdo', 'MD05G1364600' => 'mdo', 'MD07G1252100' => 'mdo', 'MD08G1086900' => 'mdo', 'MD09G1092900' => 'mdo', 'MD10G1103300' => 'mdo', 'MD10G1342500' => 'mdo', 'MD11G1142200' => 'mdo', 'MD15G1071600' => 'mdo', 'MD15G1149900' => 'mdo', 'MD17G1083000' => 'mdo', 'Medtr1g018440' => 'mtr', 'Medtr1g106735' => 'mtr', 'Medtr2g028220' => 'mtr', 'Medtr2g090050' => 'mtr', 'Medtr3g408360' => 'mtr', 'Medtr4g130490' => 'mtr', 'MELO3C003310.2' => 'cme', 'MELO3C004124.2' => 'cme', 'MELO3C010206.2' => 'cme', 'MELO3C010814.2' => 'cme', 'MELO3C013532.2' => 'cme', 'MELO3C016807.2' => 'cme', 'MELO3C018513.2' => 'cme', 'Migut.B00431' => 'egut', 'Migut.C00494' => 'egut', 'Migut.F00487' => 'egut', 'Migut.H01022' => 'egut', 'Migut.H01644' => 'egut', 'Migut.J01375' => 'egut', 'Migut.J01377' => 'egut', 'Migut.J01378' => 'egut', 'Migut.K00306' => 'egut', 'Migut.M01486' => 'egut', 'MSTRG.1029' => 'ama', 'MSTRG.10710' => 'ama', 'MSTRG.13094' => 'ama', 'MSTRG.14577' => 'ama', 'MSTRG.16688' => 'ama', 'MSTRG.19660' => 'ama', 'MSTRG.25042' => 'ama', 'MSTRG.27754' => 'ama', 'MSTRG.5326' => 'ama', 'MSTRG.6155' => 'ama', 'Nitab4.5_0000146g0110' => 'nta', 'Nitab4.5_0000146g0120' => 'nta', 'Nitab4.5_0000164g0220' => 'nta', 'Nitab4.5_0000197g0080' => 'nta', 'Nitab4.5_0001090g0030' => 'nta', 'Nitab4.5_0001105g0160' => 'nta', 'Nitab4.5_0001611g0110' => 'nta', 'Nitab4.5_0002611g0050' => 'nta', 'Nitab4.5_0003018g0010' => 'nta', 'Nitab4.5_0003336g0020' => 'nta', 'Nitab4.5_0003647g0030' => 'nta', 'Nitab4.5_0005056g0070' => 'nta', 'Nitab4.5_0007821g0020' => 'nta', 'Nitab4.5_0011243g0010' => 'nta', 'Nitab4.5_0011841g0010' => 'nta', 'Nn091s42874' => 'nnu', 'Nn1g01819' => 'nnu', 'Nn1g01820' => 'nnu', 'Nn1g03917' => 'nnu', 'Nn1g04080' => 'nnu', 'Nn1g04601' => 'nnu', 'Nn1g08378' => 'nnu', 'Nn2g11558' => 'nnu', 'Nn4g24941' => 'nnu', 'Nn4g24989' => 'nnu', 'Nn4g25212' => 'nnu', 'Nn5g30541' => 'nnu', 'Nn8g39988' => 'nnu', 'Nn8g40560' => 'nnu', 'Oeu004668.2' => 'oeu', 'Oeu004669.1' => 'oeu', 'Oeu005830.1' => 'oeu', 'Oeu011143.1' => 'oeu', 'Oeu013776.1' => 'oeu', 'Oeu015338.1' => 'oeu', 'Oeu015339.1' => 'oeu', 'Oeu021367.1' => 'oeu', 'Oeu021704.1' => 'oeu', 'Oeu024992.1' => 'oeu', 'Oeu025984.1' => 'oeu', 'Oeu025985.1' => 'oeu', 'Oeu027705.1' => 'oeu', 'Oeu027706.1' => 'oeu', 'Oeu028999.1' => 'oeu', 'Oeu031373.1' => 'oeu', 'Oeu032188.1' => 'oeu', 'Oeu037269.1' => 'oeu', 'Oeu037270.2' => 'oeu', 'Oeu052218.5' => 'oeu', 'Oeu054264.1' => 'oeu', 'Oeu057369.1' => 'oeu', 'Os02g0794300' => 'osa', 'Os03g0762900' => 'osa', 'Os07g0115600' => 'osa', 'Os08g0442000' => 'osa', 'Os09g0286300' => 'osa', 'Os09g0422600' => 'osa', 'Os10g0345600' => 'osa', 'Os10g0345701' => 'osa', 'Os10g0554900' => 'osa', 'Peaxi162Scf00016g02743' => 'pax', 'Peaxi162Scf00062g00126' => 'pax', 'Peaxi162Scf00081g00148' => 'pax', 'Peaxi162Scf00132g00729' => 'pax', 'Peaxi162Scf00132g00730' => 'pax', 'Peaxi162Scf00167g00069' => 'pax', 'Peaxi162Scf00401g00324' => 'pax', 'Peaxi162Scf00647g00043' => 'pax', 'PGR004G1652' => 'pgr', 'PGR031G0418' => 'pgr', 'PGR042G3402' => 'pgr', 'PGR042G3584' => 'pgr', 'PGR083G1418' => 'pgr', 'PGR102G2937' => 'pgr', 'PGR142G1585' => 'pgr', 'PGSC0003DMG400007216' => 'stu', 'PGSC0003DMG400011200' => 'stu', 'PGSC0003DMG400014122' => 'stu', 'PGSC0003DMG400018319' => 'stu', 'PGSC0003DMG400021528' => 'stu', 'PGSC0003DMG400025949' => 'stu', 'PGSC0003DMG400027505' => 'stu', 'PGSC0003DMG400034071' => 'stu', 'Phvul.001G026600' => 'pvu', 'Phvul.003G097000' => 'pvu', 'Phvul.003G154300' => 'pvu', 'Phvul.005G008600' => 'pvu', 'Phvul.005G107400' => 'pvu', 'Phvul.006G134011' => 'pvu', 'Phvul.007G043900' => 'pvu', 'Phvul.009G070600' => 'pvu', 'Phvul.009G194900' => 'pvu', 'Phvul.011G112000' => 'pvu', 'Potri.001G126000' => 'ptr', 'Potri.001G295800' => 'ptr', 'Potri.002G119500' => 'ptr', 'Potri.006G000400' => 'ptr', 'Potri.006G181700' => 'ptr', 'Potri.009G089800' => 'ptr', 'Potri.013G146100' => 'ptr', 'Potri.014G017500' => 'ptr', 'Potri.016G000300' => 'ptr', 'Potri.018G103800' => 'ptr', 'Pp3c20_1020' => 'ppa', 'Pp3c23_22010' => 'ppa', 'Pp3c24_20700' => 'ppa', 'Pp3c8_24940' => 'ppa', 'Prupe.1G424500' => 'ppe', 'Prupe.2G275600' => 'ppe', 'Prupe.3G232200' => 'ppe', 'Prupe.4G000100' => 'ppe', 'Prupe.7G265600' => 'ppe', 'Prupe.8G142000' => 'ppe', 'Psat1g170840' => 'psa', 'Psat5g228240' => 'psa', 'Psat5g270000' => 'psa', 'Psat6g016560' => 'psa', 'Psat6g215560' => 'psa', 'Psat7g006320' => 'psa', 'PSO017G3898' => 'pso', 'PSO063G1593' => 'pso', 'PSO063G1769' => 'pso', 'PSO111G0022' => 'pso', 'PSO170G4859' => 'pso', 'PSO541G2384' => 'pso', 'PSO561G0075' => 'pso', 'PSO675G1637' => 'pso', 'PSO675G6084' => 'pso', 'PSO782G1815' => 'pso', 'QL02p093853' => 'qlo', 'QL05p065797' => 'qlo', 'QL05p066137' => 'qlo', 'QL08p037487' => 'qlo', 'QL09p005284' => 'qlo', 'QL09p030625' => 'qlo', 'QL11p031552' => 'qlo', 'QL11p031562' => 'qlo', 'QL12p037658' => 'qlo', 'QL12p037688' => 'qlo', 'RcHm_v2.0_Chr1g0374111' => 'rch', 'RcHm_v2.0_Chr2g0085281' => 'rch', 'RcHm_v2.0_Chr2g0099741' => 'rch', 'RcHm_v2.0_Chr2g0102601' => 'rch', 'RcHm_v2.0_Chr2g0161991' => 'rch', 'RcHm_v2.0_Chr4g0405481' => 'rch', 'RcHm_v2.0_Chr5g0000021' => 'rch', 'RcHm_v2.0_Chr6g0253431' => 'rch', 'RcHm_v2.0_Chr6g0309371' => 'rch', 'Rhsim01G0027000' => 'rsi', 'Rhsim04G0065600' => 'rsi', 'Rhsim05G0090200' => 'rsi', 'Rhsim06G0060900' => 'rsi', 'Rhsim07G0221100' => 'rsi', 'Rhsim13G0137700' => 'rsi', 'Sabra01G0097000' => 'sbr', 'Sabra02G0094100' => 'sbr', 'Sabra06G0138500' => 'sbr', 'Sabra09G0069600' => 'sbr', 'Sabra13G0117900' => 'sbr', 'Sabra14G0011400' => 'sbr', 'Sabra16G0008000' => 'sbr', 'Sabra16G0184900' => 'sbr', 'Sabra18G0089200' => 'sbr', 'SalBow1G3871' => 'sbo', 'SalBow1G7520' => 'sbo', 'SalBow1G7770' => 'sbo', 'SalBow3G3991' => 'sbo', 'SalBow6G1327' => 'sbo', 'SalBow6G2953' => 'sbo', 'SalBow6G5168' => 'sbo', 'SalBow6G6651' => 'sbo', 'SalBow7G3242' => 'sbo', 'Sc02g0007810' => 'sci', 'Sc02g0007820' => 'sci', 'Sc11g0005780' => 'sci', 'Sc13g0008090' => 'sci', 'Sc14g0000960' => 'sci', 'Sc14g0002540' => 'sci', 'Sc19g0002090' => 'sci', 'Sc21g0002450' => 'sci', 'Sed0000800' => 'sed', 'Sed0002558' => 'sed', 'Sed0003952' => 'sed', 'Sed0004330' => 'sed', 'Sed0005950' => 'sed', 'Sed0008278' => 'sed', 'Sed0012085' => 'sed', 'Sed0017549' => 'sed', 'Sed0017807' => 'sed', 'Sed0019586' => 'sed', 'Sed0023727' => 'sed', 'SEGI_04100' => 'sgi', 'SEGI_33572' => 'sgi', 'SEGI_38472' => 'sgi', 'SGA_v2.0_scaffold159G37628' => 'sas', 'SGA_v2.0_scaffold186G40163' => 'sas', 'SGA_v2.0_scaffold238G43967' => 'sas', 'SGA_v2.0_scaffold239G43988' => 'sas', 'SGA_v2.0_scaffold265G46090' => 'sas', 'SGA_v2.0_scaffold2G01221' => 'sas', 'SGA_v2.0_scaffold32G13009' => 'sas', 'SGA_v2.0_scaffold337G49197' => 'sas', 'SGA_v2.0_scaffold509G52610' => 'sas', 'SMO348G0002' => 'smo', 'SMO351G0393' => 'smo', 'SMO367G0167' => 'smo', 'Solyc01g096840.3' => 'sly', 'Solyc01g107200.4' => 'sly', 'Solyc04g078000.3' => 'sly', 'Solyc07g005860.3' => 'sly', 'Solyc07g054390.1' => 'sly', 'Solyc12g019770.1' => 'sly', 'Sopen01g040550' => 'spe', 'Sopen01g049460' => 'spe', 'Sopen04g031600' => 'spe', 'Sopen05g030110' => 'spe', 'Sopen07g001960' => 'spe', 'Sp1g36770' => 'spa', 'Sp2g07940' => 'spa', 'Sp3g34040' => 'spa', 'Sp4g02980' => 'spa', 'Sp4g26270' => 'spa', 'Sp5g03180' => 'spa', 'Sp7g23210' => 'spa', 'Sp7g28620' => 'spa', 'TAR375G0077' => 'tar', 'TAR376G0410' => 'tar', 'TAR381G0627' => 'tar', 'TAR383G0943' => 'tar', 'TAR623G1040' => 'tar', 'TAR624G1068' => 'tar', 'TAR625G0024' => 'tar', 'TAR625G0105' => 'tar', 'TAR625G0781' => 'tar', 'TAR628G0131' => 'tar', 'THA.LOC104801606' => 'tha', 'THA.LOC104803914' => 'tha', 'THA.LOC104804470' => 'tha', 'THA.LOC104804739' => 'tha', 'THA.LOC104811527' => 'tha', 'THA.LOC104814682' => 'tha', 'THA.LOC104825835' => 'tha', 'THA.LOC104826492' => 'tha', 'THA.LOC104827569' => 'tha', 'THA.LOC109117133' => 'tha', 'Thecc.02G115000' => 'tca', 'Thecc.02G172500' => 'tca', 'Thecc.03G153400' => 'tca', 'Thecc.06G244800' => 'tca', 'Thecc.08G090900' => 'tca', 'Thecc.09G151900' => 'tca', 'Thhalv10000102m.g' => 'esa', 'Thhalv10001435m.g' => 'esa', 'Thhalv10002328m.g' => 'esa', 'Thhalv10006479m.g' => 'esa', 'Thhalv10011296m.g' => 'esa', 'Thhalv10020236m.g' => 'esa', 'Thhalv10024652m.g' => 'esa', 'Thhalv10025380m.g' => 'esa', 'TPR.G10485' => 'tpr', 'TPR.G12185' => 'tpr', 'TPR.G24839' => 'tpr', 'TPR.G27080' => 'tpr', 'TPR.G27112' => 'tpr', 'TPR.G35991' => 'tpr', 'TPR.G3773' => 'tpr', 'TPR.G40487' => 'tpr', 'TWI12G0182' => 'twi', 'TWI12G0257' => 'twi', 'TWI14G0453' => 'twi', 'TWI32G0728' => 'twi', 'TWI34G0421' => 'twi', 'TWI36G0041' => 'twi', 'TWI39G0625' => 'twi', 'TWI59G0104' => 'twi', 'TWI63G0168' => 'twi', 'TWI63G1332' => 'twi', 'unitig_0.g954' => 'ugi', 'unitig_0.g969' => 'ugi', 'unitig_22.g6843' => 'ugi', 'unitig_26.g9805' => 'ugi', 'unitig_26.g9806' => 'ugi', 'unitig_52.g17419' => 'ugi', 'unitig_61.g26110' => 'ugi', 'unitig_748.g7197' => 'ugi', 'vmacro03582' => 'vma', 'vmacro16783' => 'vma', 'vmacro19528' => 'vma', 'vmacro21445' => 'vma', 'vmacro21446' => 'vma', 'vmacro22063' => 'vma', 'VMungo0331G0779' => 'vmu', 'VMungo0540G1063' => 'vmu', 'VMungo0647G1708' => 'vmu', 'VMungo0647G2518' => 'vmu', 'VMungo0720G0960' => 'vmu', 'VMungo0720G2570' => 'vmu', 'VMungo1080G1510' => 'vmu', 'VMungo1127G0566' => 'vmu', 'VMungo1127G1518' => 'vmu', 'VMungo1215G3247' => 'vmu', 'VMungo1309G2297' => 'vmu', 'VMungo1309G2410' => 'vmu', 'Zm00001eb007470' => 'zma', 'Zm00001eb023530' => 'zma', 'Zm00001eb049060' => 'zma', 'Zm00001eb051520' => 'zma', 'Zm00001eb058300' => 'zma', 'Zm00001eb118080' => 'zma', 'Zm00001eb144540' => 'zma', 'Zm00001eb176880' => 'zma', 'Zm00001eb192500' => 'zma', 'Zm00001eb257690' => 'zma', 'Zm00001eb310850' => 'zma', 'Zm00001eb313260' => 'zma', 'Zm00001eb400630' => 'zma', 'Zm00001eb430650' => 'zma' ) $gf_id = 'HOM05D000641' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000641' ) $data_identifier = 'HOM05D000641' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 23, 'ath' => (int) 12, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 21, 'bol' => (int) 16, 'bra' => (int) 12, 'can' => (int) 7, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 7, 'col' => (int) 4, 'cpa' => (int) 8, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 8, 'din' => (int) 12, 'dzi' => (int) 10, 'eca' => (int) 10, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 22, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 9, 'hma' => (int) 6, 'vpl' => (int) 18, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 9, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 13, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mdo' => (int) 16, 'mtr' => (int) 6, 'cme' => (int) 7, 'egut' => (int) 10, 'ama' => (int) 10, 'nta' => (int) 15, 'nnu' => (int) 14, 'oeu' => (int) 22, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 7, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 10, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 8, 'sed' => (int) 11, 'sgi' => (int) 3, 'sas' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 12, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430650' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1